Thematic Evolution and Institutional Dynamics of Deep Learning Assisted GPCR Modulators Research: A Decade-Long Bibliometric Analysis (2015-2025)


Authors

  • Rolyn J. Jalandra Iloilo Science and Technology University, Iloilo, Philippines
  • Jullachet Wongnoi Trat Polytechnic College, Mueang Trat, Philippines
  • Rachel T. Alegado Nueva Ecija University of Science and Technology, Cabanatuan, Philippines
  • Muhammad Syahrizal Politeknik Cendana, Medan, Indonesia

Keywords:

Deep Learning; GPCR; G Protein-Coupled Receptor; Bibliometric Analysis; Drug Discovery; Allosteric Modulators; Chemoinformatics

Abstract

The present investigation is constituted by the objective assessment of the scientific performance, the underlying social structure, and the conceptual evolution characteristic of research pertaining to Deep Learning (DL)-Assisted GPCR Modulators during the decennial period spanning 2015 through 2025. Given the critically pivotal function of G Protein-Coupled Receptors (GPCRs) in the pharmacological endeavor of drug discovery, the integration of DL methodologies is deemed to afford a vital pathway for the surmounting of traditional screening impediments. A quantitative bibliometric analysis was executed upon 132 documented items retrieved from the Scopus database and subsequently processed via the dedicated Bibliometrix/Biblioshiny software suite. Observational data delineate an exponential augmentation in output, characterized by a Compound Annual Growth Rate (CAGR) measuring 29.73%, and demonstrative of a collaborative axis dominantly positioned between the United States and China. Conceptually, the principal Motor Themes identified are "Algorithm," "Proteins," and "Prediction." The thematic evolution evinces a distinct paradigm shift in the research emphasis, progressing from the development of general computational methodologies toward specific pharmacological and clinical objectives relating to Drug Targeting. It is concluded that this specialized domain has achieved a substantial degree of maturation, transitioning from a foundational preoccupation with algorithmic concerns to a primary focus upon application-driven, outcomes-based pharmacological desiderata.

References

Alves, V. M., Yasgar, A., Wellnitz, J., Rai, G., Rath, M., Braga, R. C., Capuzzi, S. J., Simeonov, A., Muratov, E. N., Zakharov, A. V., & Tropsha, A. (2023). Lies and Liabilities: Computational Assessment of High-Throughput Screening Hits to Identify Artifact Compounds. Journal of Medicinal Chemistry, 66(18), 12828–12839. https://doi.org/10.1021/acs.jmedchem.3c00482

Amiruddin, M. Z. Bin, Samsudin, A., Suhandi, A., Co?tu, B., & Prahani, B. K. (2025). Scientific mapping and trend of conceptual change: A bibliometric analysis. Social Sciences and Humanities Open, 11(November 2024). https://doi.org/10.1016/j.ssaho.2024.101208

Barresi, E., Martini, C., Da Settimo, F., Greco, G., Taliani, S., Giacomelli, C., & Trincavelli, M. L. (2021). Allosterism vs. Orthosterism: Recent Findings and Future Perspectives on A2B AR Physio-Pathological Implications. Frontiers in Pharmacology, 12(March), 1–8. https://doi.org/10.3389/fphar.2021.652121

Bhatt, P. C., Hsu, Y. C., Lai, K. K., & Drave, V. A. (2025). From Transactions to Transformations: A Bibliometric Study on Technology Convergence in E-Payments. Applied System Innovation, 8(4), 1–26. https://doi.org/10.3390/asi8040091

Boeringer, T., Pardo, M., Craig, C. J., & Maudsley, S. (2025). G protein-coupled receptor digital twins for precision and personalized medicine. Computational and Structural Biotechnology Journal, 28(August), 538–551. https://doi.org/10.1016/j.csbj.2025.11.042

Boronina, A., Maksimenko, V., & Hramov, A. E. (2023). Convolutional Neural Network Outperforms Graph Neural Network on the Spatially Variant Graph Data. Mathematics, 11(11), 1–13. https://doi.org/10.3390/math11112515

Cheng, L., Xia, F., Li, Z., Shen, C., Yang, Z., Hou, H., Sun, S., Feng, Y., Yong, X., Tian, X., Qin, H., Yan, W., & Shao, Z. (2023). Structure, function and drug discovery of GPCR signaling. Molecular Biomedicine, 4(1). https://doi.org/10.1186/s43556-023-00156-w

Cho, Y. Y., Kim, S., Kim, P., Jo, M. J., Park, S. E., Choi, Y., Jung, S. M., & Kang, H. J. (2025). G-Protein-Coupled Receptor (GPCR) Signaling and Pharmacology in Metabolism: Physiology, Mechanisms, and Therapeutic Potential. Biomolecules, 15(2). https://doi.org/10.3390/biom15020291

Dodge, S., & Noi, E. (2021). Mapping trajectories and flows: facilitating a human-centered approach to movement data analytics. Cartography and Geographic Information Science, 48(4), 353–375. https://doi.org/10.1080/15230406.2021.1913763

Fu, C., & Chen, Q. (2025). The future of pharmaceuticals: Artificial intelligence in drug discovery and development. Journal of Pharmaceutical Analysis, 15(8), 101248. https://doi.org/10.1016/j.jpha.2025.101248

Gangwal, A., & Lavecchia, A. (2025). Artificial Intelligence in Natural Product Drug Discovery: Current Applications and Future Perspectives. Journal of Medicinal Chemistry, 68(4), 3948–3969. https://doi.org/10.1021/acs.jmedchem.4c01257

Grant, S., & Khatua, S. (2024). Research transparency and reproducibility policies and programmes at the international initiative for impact evaluation. Journal of Development Effectiveness, 16(3), 363–373. https://doi.org/10.1080/19439342.2024.2388102

Gupta, G., & Verkhivker, G. (2024). Exploring Binding Pockets in the Conformational States of the SARS-CoV-2 Spike Trimers for the Screening of Allosteric Inhibitors Using Molecular Simulations and Ensemble-Based Ligand Docking. In International Journal of Molecular Sciences (Vol. 25, Issue 9). https://doi.org/10.3390/ijms25094955

Javid, S., Rahmanulla, A., Ahmed, M. G., sultana, R., & Prashantha Kumar, B. R. (2025). Machine learning & deep learning tools in pharmaceutical sciences: A comprehensive review. Intelligent Pharmacy, 3(3), 167–180. https://doi.org/10.1016/j.ipha.2024.11.003

Jones, E. M., Lubock, N. B., Venkatakrishnan, A. J., Wang, J., Tseng, A. M., Paggi, J. M., Latorraca, N. R., Cancilla, D., Satyadi, M., Davis, J. E., Babu, M. M., Dror, R. O., & Kosuri, S. (2020). Structural and functional characterization of G protein-coupled receptors with deep mutational scanning. ELife, 9, 1–52. https://doi.org/10.7554/eLife.54895

Jung, W., Goo, S., Hwang, T., Lee, H., Kim, Y. K., Chae, J. W., Yun, H. Y., & Jung, S. (2024). Absorption Distribution Metabolism Excretion and Toxicity Property Prediction Utilizing a Pre-Trained Natural Language Processing Model and Its Applications in Early-Stage Drug Development. Pharmaceuticals, 17(3). https://doi.org/10.3390/ph17030382

Khan, S., Huda, B., Bhurka, F., Patnaik, R., & Banerjee, Y. (2025). Molecular and Immunomodulatory Mechanisms of Statins in Inflammation and Cancer Therapeutics with Emphasis on the NF-?B, NLRP3 Inflammasome, and Cytokine Regulatory Axes. International Journal of Molecular Sciences, 26(17). https://doi.org/10.3390/ijms26178429

Krishnan, A. R., Hamid, R., Tanakinjal, G. H., Bahri, S., & Arumugam, N. (2025). A Bibliometric Analysis of Scientific Publications at Universiti Malaysia Sabah. Journal of Applied Science, Engineering, Technology, and Education, 7(2), 326–336. https://doi.org/10.35877/454RI.asci4189

Kulichenko, M., Nebgen, B., Lubbers, N., Smith, J. S., Barros, K., Allen, A. E. A., Habib, A., Shinkle, E., Fedik, N., Li, Y. W., Messerly, R. A., & Tretiak, S. (2024). Data Generation for Machine Learning Interatomic Potentials and Beyond. Chemical Reviews, 124(24), 13681–13714. https://doi.org/10.1021/acs.chemrev.4c00572

Latek, D., Prajapati, K., Dragan, P., Merski, M., & Osial, P. (2025). GPCRVS - AI-driven Decision Support System for GPCR Virtual Screening. International Journal of Molecular Sciences, 26(5). https://doi.org/10.3390/ijms26052160

Lim, W. M., Kumar, S., & Donthu, N. (2024). How to combine and clean bibliometric data and use bibliometric tools synergistically: Guidelines using metaverse research. Journal of Business Research, 182(December 2023), 114760. https://doi.org/10.1016/j.jbusres.2024.114760

Liu, W., Li, X., Hang, B., & Wang, P. (2025). EnGCI: enhancing GPCR-compound interaction prediction via large molecular models and KAN network. BMC Biology, 23(1). https://doi.org/10.1186/s12915-025-02238-3

López Fernández, D., & Oliver, M. (2025). Methodology, strategies, and factors for business innovation in large companies. International Journal of Innovation Studies, 9(2), 91–115. https://doi.org/10.1016/j.ijis.2025.02.002

Marques, L., Costa, B., Pereira, M., Silva, A., Santos, J., Saldanha, L., Silva, I., Magalhães, P., Schmidt, S., & Vale, N. (2024). Advancing Precision Medicine: A Review of Innovative In Silico Approaches for Drug Development, Clinical Pharmacology and Personalized Healthcare. Pharmaceutics, 16(3). https://doi.org/10.3390/pharmaceutics16030332

Meng, X., Li, Y., Liu, K., Liu, Y., Yang, B., Song, X., Liao, G., Wang, S., Yu, Z., Chen, L., Pan, X., & Lin, Y. (2025). Spatial data intelligence and city metaverse: A review. Fundamental Research, 5(3), 1169–1193. https://doi.org/10.1016/j.fmre.2023.10.014

Mühl, D. D., & de Oliveira, L. (2022). A bibliometric and thematic approach to agriculture 4.0. Heliyon, 8(5). https://doi.org/10.1016/j.heliyon.2022.e09369

Serrano, D. R., Luciano, F. C., Anaya, B. J., Ongoren, B., Kara, A., Molina, G., Ramirez, B. I., Sánchez-Guirales, S. A., Simon, J. A., Tomietto, G., Rapti, C., Ruiz, H. K., Rawat, S., Kumar, D., & Lalatsa, A. (2024). Artificial Intelligence (AI) Applications in Drug Discovery and Drug Delivery: Revolutionizing Personalized Medicine. Pharmaceutics, 16(10). https://doi.org/10.3390/pharmaceutics16101328

Shaheen, N., Shaheen, A., Ramadan, A., Hefnawy, M. T., Ramadan, A., Ibrahim, I. A., Hassanein, M. E., Ashour, M. E., & Flouty, O. (2023). Appraising systematic reviews: a comprehensive guide to ensuring validity and reliability. Frontiers in Research Metrics and Analytics, 8. https://doi.org/10.3389/frma.2023.1268045

Shen, S., Zhao, C., Wu, C., Sun, S., Li, Z., Yan, W., & Shao, Z. (2023). Allosteric modulation of G protein-coupled receptor signaling. Frontiers in Endocrinology, 14(February), 1–13. https://doi.org/10.3389/fendo.2023.1137604

Shi, Y., Cao, S., Ni, D., Fan, J., Lu, S., & Xue, M. (2022). The Role of Conformational Dynamics and Allostery in the Control of Distinct Efficacies of Agonists to the Glucocorticoid Receptor. Frontiers in Molecular Biosciences, 9(July), 1–19. https://doi.org/10.3389/fmolb.2022.933676

Son, A., Kim, W., Park, J., Lee, W., Lee, Y., Choi, S., & Kim, H. (2024). Utilizing Molecular Dynamics Simulations, Machine Learning, Cryo-EM, and NMR Spectroscopy to Predict and Validate Protein Dynamics. International Journal of Molecular Sciences, 25(17). https://doi.org/10.3390/ijms25179725

Ul Haque, A., Patel, D. N., & Gkasis, P. (2025). The Impact of Artificial Intelligence on Modern Entrepreneurship. Entrepreneurship: A Contemporary Perspective, 154–162. https://doi.org/10.4324/9781003504351-13

Verma, N., Dhiman, B., Singh, V., Kaur, J., Guleria, S., & Singh, T. (2024). Exploring the global landscape of work-life balance research: A bibliometric and thematic analysis. Heliyon, 10(11), e31662. https://doi.org/10.1016/j.heliyon.2024.e31662

Voicu, V., Brehar, F. M., Toader, C., Covache-Busuioc, R. A., Corlatescu, A. D., Bordeianu, A., Costin, H. P., Bratu, B. G., Glavan, L. A., & Ciurea, A. V. (2023). Cannabinoids in Medicine: A Multifaceted Exploration of Types, Therapeutic Applications, and Emerging Opportunities in Neurodegenerative Diseases and Cancer Therapy. Biomolecules, 13(9), 1–45. https://doi.org/10.3390/biom13091388

Wen, S., Tan, Q., Baheti, R., Wan, J., Yu, S., Zhang, B., & Huang, Y. (2024). Bibliometric analysis of global research on air pollution and cardiovascular diseases: 2012–2022. Heliyon, 10(12), e32840. https://doi.org/10.1016/j.heliyon.2024.e32840

Xia, J., Kang, J., & Xu, X. (2024). Global Research Trends and Future Directions in Urban Historical Heritage Area Conservation and Development: A 25-Year Bibliometric Analysis. Buildings, 14(10). https://doi.org/10.3390/buildings14103096

Yan, Y., Edwards, B. I., & Sanmugam, M. (2025). Scientometric analysis of emerging trends and research landscape of ERNIE Bot’s potentials as an educational tool: A mixed method study of a large language model. Social Sciences and Humanities Open, 12(February). https://doi.org/10.1016/j.ssaho.2025.101729

Yasmeen, G., Anthonysamy, L., & Ojo, A. O. (2025). Resource-Governed BDA Adoption for Resilient Supply-Chain Operations: Qualitative Evidence from Malaysian Manufacturing Industry. In Sustainability (Switzerland) (Vol. 17, Issue 21). https://doi.org/10.3390/su17219620


Bila bermanfaat silahkan share artikel ini

Berikan Komentar Anda terhadap artikel Thematic Evolution and Institutional Dynamics of Deep Learning Assisted GPCR Modulators Research: A Decade-Long Bibliometric Analysis (2015-2025)

Dimensions Badge

ARTICLE HISTORY

Published: 2026-01-19

Abstract View: 162 times
PDF Download: 69 times

How to Cite

Jalandra, R. J., Wongnoi, J., Alegado, R. T., & Syahrizal, M. (2026). Thematic Evolution and Institutional Dynamics of Deep Learning Assisted GPCR Modulators Research: A Decade-Long Bibliometric Analysis (2015-2025). Proceeding of International Conference Technology, Economics, and Social Science, 1(1), 28-37. Retrieved from https://journals.adaresearch.or.id/ictess/article/view/312